PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g27180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 232aa    MW: 26032.6 Da    PI: 9.4683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g27180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019107129123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C k F+++  L  H++ H
  CA03g27180 107 YECHFCLKKFTNSRALGGHQNAH 129
                 99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.03E-6103134No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4104133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.157107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDKALYRKPT NLNLPLTGRN GADIVCCKTT TSDKKLRIFG FEVNPCPKDI ICSTSESKES  60
IISSETFADE RPVGKTSICM NSSGIVHPNP NEILRNLSSS VVSEVKYECH FCLKKFTNSR  120
ALGGHQNAHR KERLKKKRMD LEAKRASSMF HLYSLIRNSG VIYPYYSLSH RNPALYVPTI  180
VSGSSLVNFD SVYHYHNVTH PLYVTVDADQ GELRLQNNWQ GGAYRGRDLL S*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-177HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567620.11e-173PREDICTED: uncharacterized protein LOC107865948
TrEMBLM1C9N81e-123M1C9N8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628661e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA619466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-11C2H2 family protein